Operational taxonomic units of deep-sea fishes from environmental DNA collected during Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay, with links to accession numbers
Analysis of fish environmental DNA (DNA traces released into the environment in form of tissue, mucus, feces, etc.) from several oceanic vertical profiles (from the surface up to 2000 m depth) along the continental slope of the Bay of Biscay. We provide the geographical location of each vertical profile, the station at which each sample belongs to, the depth, date, and hour at which each sample was collected, if the sampling was carried out during day or nighttime, and the water volume filtered. The accession numbers to the raw data of the sequenced samples (available on BioProject ID insdc:PRJNA759107) are also detailed. All samples were obtained by deploying a rosette sampler, and the surface ones were also collected using the continuous clean circuit intake of the vessel. The final operational taxonomic unit counts (OTUs) of the fish species were based on sequencing the mitochondrial 12S rRNA gene on an Illumina MiSeq platform, and taxonomic assignment to the World Register of Marine Species (WoRMS) and a local database restricted to fish species of the Northeast Atlantic and Mediterranean areas.
Simple
- Date (Publication)
- 2021-09-15T14:31:48
- Citation identifier
- https://doi.org/10.1594/PANGAEA.935870
- Cited responsible party
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Organisation name Individual name Electronic mail address Role Canals, Oriol
Author Mendibil, Iñaki
Author Santos Mocoroa, María
Author Irigoien, Xabier
Author Rodríguez-Ezpeleta, Naiara
Author PANGAEA
Publisher
- Presentation form
- Digital table
- Status
- Completed
- Point of contact
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Organisation name Individual name Electronic mail address Role Rodríguez-Ezpeleta, Naiara
Principal investigator
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PANGAEA Keyword List
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eDNA metabarcoding
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environmental DNA
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Field observation
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fish diversity
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fish ecology
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Mesopelagic ecosystem
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Pisces
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vertical migration
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PANGAEA Project List
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EDAMAME
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Environmental DNA based approaches for marine and aquatic monitoring and evaluation
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SUMMER
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Sustainable Management of Mesopelagic Resources
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- Access constraints
- Copyright
- Use constraints
- Copyright
- Other constraints
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CC-BY-4.0: Creative Commons Attribution 4.0 International
- Spatial representation type
- Text, table
- Language
- und
- Topic category
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- Geoscientific information
- Begin date
- 2018-05-09T11:30:00
- End date
- 2018-05-24T17:10:00
Vertical extent
- Minimum value
- 5.0
- Maximum value
- 2080.0
- Distribution format
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Name Version text/tab-separated-values
unknown
- OnLine resource
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Protocol Linkage Name https://doi.pangaea.de/10.1594/PANGAEA.935870?format=textfile
- Hierarchy level
- Dataset
- Statement
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The data set was checked for completeness, correctness, and consistency of metainformation. Validity of used methods was checked and - if applicable - precision and range of data.
- Description
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EVENT LABEL: BIOMAN_2018_PV_37-1 (PV_37) * LATITUDE: 43.880000 * LONGITUDE: -6.330000 * DATE/TIME: 2018-05-09T11:30:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
- Date / Time
- 2018-05-09T11:30:00
- Description
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EVENT LABEL: BIOMAN_2018_PV_54-1 (PV_54) * LATITUDE: 43.770000 * LONGITUDE: -4.600000 * DATE/TIME: 2018-05-10T04:52:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
- Date / Time
- 2018-05-10T04:52:00
- Description
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EVENT LABEL: BIOMAN_2018_PV_111-1 (PV_111) * LATITUDE: 43.600000 * LONGITUDE: -2.720000 * DATE/TIME: 2018-05-11T20:07:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
- Date / Time
- 2018-05-11T20:07:00
- Description
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EVENT LABEL: BIOMAN_2018_PV_136-1 (PV_136) * LATITUDE: 43.670000 * LONGITUDE: -2.170000 * DATE/TIME: 2018-05-12T09:10:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
- Date / Time
- 2018-05-12T09:10:00
- Description
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EVENT LABEL: BIOMAN_2018_PV_236-1 (PV_236) * LATITUDE: 44.630000 * LONGITUDE: -2.350000 * DATE/TIME: 2018-05-13T23:10:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
- Date / Time
- 2018-05-13T23:10:00
- Description
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EVENT LABEL: BIOMAN_2018_PV_402-1 (PV_402) * LATITUDE: 45.630000 * LONGITUDE: -3.710000 * DATE/TIME: 2018-05-19T12:03:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
- Date / Time
- 2018-05-19T12:03:00
- Description
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EVENT LABEL: BIOMAN_2018_PV_555-1 (PV_555) * LATITUDE: 46.620000 * LONGITUDE: -5.130000 * DATE/TIME: 2018-05-22T18:43:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
- Date / Time
- 2018-05-22T18:43:00
- Description
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EVENT LABEL: BIOMAN_2018_PV_629-1 (PV_629) * LATITUDE: 47.350000 * LONGITUDE: -6.430000 * DATE/TIME: 2018-05-24T15:35:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
- Date / Time
- 2018-05-24T15:35:00
- Description
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Supplement to
- Date (Publication)
- 2021-01-01
- Citation identifier
- https://doi.org/10.1002/lol2.10213
- Cited responsible party
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Organisation name Individual name Electronic mail address Role Canals, Oriol
Author Mendibil, Iñaki
Author Santos Mocoroa, María
Author Irigoien, Xabier
Author Rodríguez-Ezpeleta, Naiara
Author
- Presentation form
- Digital document
- Name
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Limnology and Oceanography Letters
- Issue identification
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6(6)
- Page
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339-347
- Description
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Related to
- Date (Publication)
- 2021-01-01
- Citation identifier
- insdc:PRJNA759107
- Cited responsible party
-
Organisation name Individual name Electronic mail address Role Rodríguez-Ezpeleta, Naiara
Author
- Presentation form
- Digital document
- Name
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European Nucleotide Archive (ENA)
- Description
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Other version
- Date (Publication)
- 2021-01-01
- Citation identifier
- https://doi.org/10.5281/zenodo.4543255
- Cited responsible party
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Organisation name Individual name Electronic mail address Role Rodríguez-Ezpeleta, Naiara
Author
- Presentation form
- Digital document
- Name
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Zenodo
- Attribute description
- Event label
- Content type
- Thematic classification
- Attribute description
- Station label
- Content type
- Thematic classification
- Attribute description
- DATE/TIME
- Content type
- Thematic classification
- Attribute description
- Latitude of event
- Content type
- Thematic classification
- Attribute description
- Longitude of event
- Content type
- Thematic classification
- Attribute description
- DEPTH, water
- Content type
- Physical measurement
- Attribute description
- Time of day
- Content type
- Thematic classification
- Attribute description
- Water volume, filtered
- Content type
- Physical measurement
- Attribute description
- Sample ID
- Content type
- Thematic classification
- Attribute description
- Accession number, genetics
- Content type
- Thematic classification
- Descriptor
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sample
- Attribute description
- Accession number, genetics
- Content type
- Thematic classification
- Descriptor
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project
- Attribute description
- Alepocephalus agassizii, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Anguilla anguilla, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Aphanopus carbo, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Aphia minuta, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Argentina silus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Bathylagus euryops, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Bathytroctes microlepis, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Benthosema glaciale, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Capros aper, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Centroscymnus crepidater, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Cetorhinus maximus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Chelon sp., operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Ctenolabrus rupestris, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Cyclothone microdon, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Dicentrarchus labrax, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Diplodus sargus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Engraulis encrasicolus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Epigonus telescopus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Euthynnus alletteratus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Gadiculus thori, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Helicolenus dactylopterus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Katsuwonus pelamis, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Lamna nasus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Lampanyctus crocodilus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Lepidion eques, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Leucoraja naevus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Lophius piscatorius, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Maurolicus muelleri, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Merluccius merluccius, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Micromesistius poutassou, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Mola mola, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Notacanthus chemnitzii, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Notoscopelus kroyeri, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Pagellus sp., operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Pagrus major, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Phoxinus sp., operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Pomatoschistus sp., operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Prionace glauca, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Reinhardtius hippoglossoides, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Salmo trutta, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Sardina pilchardus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Scomber sp., operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Scophthalmus maximus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Sigmops bathyphilus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Solea solea, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Sprattus sprattus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Stomias boa boa, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Thunnus sp., operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Trachurus trachurus, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Trisopterus sp., operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
- Attribute description
- Xenodermichthys copei, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
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Metabarcoding
- Attribute description
- Xiphias gladius, operational taxonomic unit
- Content type
- Physical measurement
- Descriptor
-
Metabarcoding
Metadata
- File identifier
- de.pangaea.dataset935870 XML
- Metadata language
- und
- Hierarchy level
- Dataset
- Date stamp
- 2023-11-23T22:56:06Z
- Metadata author
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Organisation name Individual name Electronic mail address Role PANGAEA
Point of contact
- Dataset URI