Operational taxonomic units of deep-sea fishes from environmental DNA collected during Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay, with links to accession numbers

Analysis of fish environmental DNA (DNA traces released into the environment in form of tissue, mucus, feces, etc.) from several oceanic vertical profiles (from the surface up to 2000 m depth) along the continental slope of the Bay of Biscay. We provide the geographical location of each vertical profile, the station at which each sample belongs to, the depth, date, and hour at which each sample was collected, if the sampling was carried out during day or nighttime, and the water volume filtered. The accession numbers to the raw data of the sequenced samples (available on BioProject ID insdc:PRJNA759107) are also detailed. All samples were obtained by deploying a rosette sampler, and the surface ones were also collected using the continuous clean circuit intake of the vessel. The final operational taxonomic unit counts (OTUs) of the fish species were based on sequencing the mitochondrial 12S rRNA gene on an Illumina MiSeq platform, and taxonomic assignment to the World Register of Marine Species (WoRMS) and a local database restricted to fish species of the Northeast Atlantic and Mediterranean areas.

Simple

Date (Publication)
2021-09-15T14:31:48
Citation identifier
https://doi.org/10.1594/PANGAEA.935870
Cited responsible party
Organisation name Individual name Electronic mail address Role

Canals, Oriol

ocanalsd@gmail.com

Author

Mendibil, Iñaki

imendibil@azti.es

Author

Santos Mocoroa, María

msantos@azti.es

Author

Irigoien, Xabier

xirigoien@azti.es

Author

Rodríguez-Ezpeleta, Naiara

nrodriguez@azti.es

Author

PANGAEA

info@pangaea.de

Publisher
Presentation form
Digital table
Status
Completed
Point of contact
Organisation name Individual name Electronic mail address Role

Rodríguez-Ezpeleta, Naiara

nrodriguez@azti.es

Principal investigator

PANGAEA Keyword List

  • eDNA metabarcoding

  • environmental DNA

  • Field observation

  • fish diversity

  • fish ecology

  • Mesopelagic ecosystem

  • Pisces

  • vertical migration

PANGAEA Project List

  • EDAMAME

  • Environmental DNA based approaches for marine and aquatic monitoring and evaluation

  • SUMMER

  • Sustainable Management of Mesopelagic Resources
Access constraints
Copyright
Use constraints
Copyright
Other constraints

CC-BY-4.0: Creative Commons Attribution 4.0 International
Spatial representation type
Text, table
Language
und
Topic category
  • Geoscientific information
N
S
E
W
thumbnail




Begin date
2018-05-09T11:30:00
End date
2018-05-24T17:10:00

Vertical extent

Minimum value
5.0
Maximum value
2080.0
Distribution format
Name Version

text/tab-separated-values

unknown
OnLine resource
Protocol Linkage Name
https://doi.pangaea.de/10.1594/PANGAEA.935870?format=textfile
Hierarchy level
Dataset
Statement

The data set was checked for completeness, correctness, and consistency of metainformation. Validity of used methods was checked and - if applicable - precision and range of data.

Description

EVENT LABEL: BIOMAN_2018_PV_37-1 (PV_37) * LATITUDE: 43.880000 * LONGITUDE: -6.330000 * DATE/TIME: 2018-05-09T11:30:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette

Date / Time
2018-05-09T11:30:00
Description

EVENT LABEL: BIOMAN_2018_PV_54-1 (PV_54) * LATITUDE: 43.770000 * LONGITUDE: -4.600000 * DATE/TIME: 2018-05-10T04:52:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette

Date / Time
2018-05-10T04:52:00
Description

EVENT LABEL: BIOMAN_2018_PV_111-1 (PV_111) * LATITUDE: 43.600000 * LONGITUDE: -2.720000 * DATE/TIME: 2018-05-11T20:07:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette

Date / Time
2018-05-11T20:07:00
Description

EVENT LABEL: BIOMAN_2018_PV_136-1 (PV_136) * LATITUDE: 43.670000 * LONGITUDE: -2.170000 * DATE/TIME: 2018-05-12T09:10:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette

Date / Time
2018-05-12T09:10:00
Description

EVENT LABEL: BIOMAN_2018_PV_236-1 (PV_236) * LATITUDE: 44.630000 * LONGITUDE: -2.350000 * DATE/TIME: 2018-05-13T23:10:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette

Date / Time
2018-05-13T23:10:00
Description

EVENT LABEL: BIOMAN_2018_PV_402-1 (PV_402) * LATITUDE: 45.630000 * LONGITUDE: -3.710000 * DATE/TIME: 2018-05-19T12:03:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette

Date / Time
2018-05-19T12:03:00
Description

EVENT LABEL: BIOMAN_2018_PV_555-1 (PV_555) * LATITUDE: 46.620000 * LONGITUDE: -5.130000 * DATE/TIME: 2018-05-22T18:43:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette

Date / Time
2018-05-22T18:43:00
Description

EVENT LABEL: BIOMAN_2018_PV_629-1 (PV_629) * LATITUDE: 47.350000 * LONGITUDE: -6.430000 * DATE/TIME: 2018-05-24T15:35:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette

Date / Time
2018-05-24T15:35:00
Description

Supplement to
Title

Vertical stratification of environmental DNA in the open ocean captures ecological patterns and behavior of deep‐sea fishes
Date (Publication)
2021-01-01
Citation identifier
https://doi.org/10.1002/lol2.10213
Cited responsible party
Organisation name Individual name Electronic mail address Role

Canals, Oriol

ocanalsd@gmail.com

Author

Mendibil, Iñaki

imendibil@azti.es

Author

Santos Mocoroa, María

msantos@azti.es

Author

Irigoien, Xabier

xirigoien@azti.es

Author

Rodríguez-Ezpeleta, Naiara

nrodriguez@azti.es

Author
Presentation form
Digital document
Name

Limnology and Oceanography Letters
Issue identification

6(6)
Page

339-347
Description

Related to
Title

Marine metagenomes (eDNA) from the Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay
Date (Publication)
2021-01-01
Citation identifier
insdc:PRJNA759107
Cited responsible party
Organisation name Individual name Electronic mail address Role

Rodríguez-Ezpeleta, Naiara

nrodriguez@azti.es

Author
Presentation form
Digital document
Name

European Nucleotide Archive (ENA)
Description

Other version
Title

Vertical stratification of environmental DNA in the open ocean captures ecological patterns and behavior of deep-sea fishes - Data and Scripts

Date (Publication)
2021-01-01
Citation identifier
https://doi.org/10.5281/zenodo.4543255
Cited responsible party
Organisation name Individual name Electronic mail address Role

Rodríguez-Ezpeleta, Naiara

nrodriguez@azti.es

Author
Presentation form
Digital document
Name

Zenodo
Attribute description
Event label
Content type
Thematic classification
Attribute description
Station label
Content type
Thematic classification
Attribute description
DATE/TIME
Content type
Thematic classification
Attribute description
Latitude of event
Content type
Thematic classification
Attribute description
Longitude of event
Content type
Thematic classification
Attribute description
DEPTH, water
Content type
Physical measurement
Attribute description
Time of day
Content type
Thematic classification
Attribute description
Water volume, filtered
Content type
Physical measurement
Attribute description
Sample ID
Content type
Thematic classification
Attribute description
Accession number, genetics
Content type
Thematic classification
Descriptor

sample
Attribute description
Accession number, genetics
Content type
Thematic classification
Descriptor

project
Attribute description
Alepocephalus agassizii, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Anguilla anguilla, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Aphanopus carbo, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Aphia minuta, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Argentina silus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Bathylagus euryops, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Bathytroctes microlepis, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Benthosema glaciale, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Capros aper, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Centroscymnus crepidater, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Cetorhinus maximus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Chelon sp., operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Ctenolabrus rupestris, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Cyclothone microdon, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Dicentrarchus labrax, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Diplodus sargus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Engraulis encrasicolus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Epigonus telescopus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Euthynnus alletteratus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Gadiculus thori, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Helicolenus dactylopterus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Katsuwonus pelamis, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Lamna nasus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Lampanyctus crocodilus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Lepidion eques, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Leucoraja naevus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Lophius piscatorius, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Maurolicus muelleri, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Merluccius merluccius, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Micromesistius poutassou, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Mola mola, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Notacanthus chemnitzii, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Notoscopelus kroyeri, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Pagellus sp., operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Pagrus major, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Phoxinus sp., operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Pomatoschistus sp., operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Prionace glauca, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Reinhardtius hippoglossoides, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Salmo trutta, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Sardina pilchardus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Scomber sp., operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Scophthalmus maximus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Sigmops bathyphilus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Solea solea, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Sprattus sprattus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Stomias boa boa, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Thunnus sp., operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Trachurus trachurus, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Trisopterus sp., operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Xenodermichthys copei, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding
Attribute description
Xiphias gladius, operational taxonomic unit
Content type
Physical measurement
Descriptor

Metabarcoding

Metadata

File identifier
de.pangaea.dataset935870 XML
Metadata language
und
Hierarchy level
Dataset
Date stamp
2024-10-01T12:35:13Z
Metadata author
Organisation name Individual name Electronic mail address Role

PANGAEA

info@pangaea.de

Point of contact
Dataset URI

https://doi.pangaea.de/10.1594/PANGAEA.935870

 
 

Overviews

Spatial extent

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Keywords

PANGAEA Keyword List

Field observation Mesopelagic ecosystem Pisces eDNA metabarcoding environmental DNA fish diversity fish ecology vertical migration
PANGAEA Project List

EDAMAME Environmental DNA based approaches for marine and aquatic monitoring and evaluation SUMMER Sustainable Management of Mesopelagic Resources


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