de.pangaea.dataset935870 und dataset PANGAEA info@pangaea.de https://www.pangaea.de/ information pointOfContact 2026-09-15T06:07:27Z https://doi.pangaea.de/10.1594/PANGAEA.935870 Operational taxonomic units of deep-sea fishes from environmental DNA collected during Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay, with links to accession numbers 2021-09-15T14:31:48 publication https://doi.org/10.1594/PANGAEA.935870 Canals, Oriol ocanalsd@gmail.com https://orcid.org/0000-0003-1016-1302 information author Mendibil, Iñaki imendibil@azti.es author Santos Mocoroa, María msantos@azti.es author Irigoien, Xabier xirigoien@azti.es https://orcid.org/0000-0002-5411-6741 information author Rodríguez-Ezpeleta, Naiara nrodriguez@azti.es https://orcid.org/0000-0001-6735-6755 information author PANGAEA info@pangaea.de https://www.pangaea.de/ information publisher tableDigital Analysis of fish environmental DNA (DNA traces released into the environment in form of tissue, mucus, feces, etc.) from several oceanic vertical profiles (from the surface up to 2000 m depth) along the continental slope of the Bay of Biscay. We provide the geographical location of each vertical profile, the station at which each sample belongs to, the depth, date, and hour at which each sample was collected, if the sampling was carried out during day or nighttime, and the water volume filtered. The accession numbers to the raw data of the sequenced samples (available on BioProject ID insdc:PRJNA759107) are also detailed. All samples were obtained by deploying a rosette sampler, and the surface ones were also collected using the continuous clean circuit intake of the vessel. The final operational taxonomic unit counts (OTUs) of the fish species were based on sequencing the mitochondrial 12S rRNA gene on an Illumina MiSeq platform, and taxonomic assignment to the World Register of Marine Species (WoRMS) and a local database restricted to fish species of the Northeast Atlantic and Mediterranean areas. completed Rodríguez-Ezpeleta, Naiara nrodriguez@azti.es https://orcid.org/0000-0001-6735-6755 information principalInvestigator eDNA metabarcoding environmental DNA Field observation fish diversity fish ecology Mesopelagic ecosystem Pisces vertical migration theme PANGAEA Keyword List 1995-01-01 creation PANGAEA info@pangaea.de https://www.pangaea.de/ information pointOfContact EDAMAME Environmental DNA based approaches for marine and aquatic monitoring and evaluation SUMMER Sustainable Management of Mesopelagic Resources theme PANGAEA Project List 1995-01-01 creation PANGAEA info@pangaea.de https://www.pangaea.de/ information pointOfContact copyright copyright CC-BY-4.0: Creative Commons Attribution 4.0 International textTable und geoscientificInformation -6.430000000000007 -2.170000000000016 43.6 47.35 2018-05-09T11:30:00 2018-05-24T17:10:00 5.0 2080.0 Event label thematicClassification Station label thematicClassification DATE/TIME thematicClassification Latitude of event thematicClassification Longitude of event thematicClassification DEPTH, water physicalMeasurement m m Time of day thematicClassification Water volume, filtered physicalMeasurement m**3 m**3 Sample ID thematicClassification Accession number, genetics thematicClassification sample Accession number, genetics thematicClassification project Alepocephalus agassizii, operational taxonomic unit physicalMeasurement Metabarcoding # # Anguilla anguilla, operational taxonomic unit physicalMeasurement Metabarcoding # # Aphanopus carbo, operational taxonomic unit physicalMeasurement Metabarcoding # # Aphia minuta, operational taxonomic unit physicalMeasurement Metabarcoding # # Argentina silus, operational taxonomic unit physicalMeasurement Metabarcoding # # Bathylagus euryops, operational taxonomic unit physicalMeasurement Metabarcoding # # Bathytroctes microlepis, operational taxonomic unit physicalMeasurement Metabarcoding # # Benthosema glaciale, operational taxonomic unit physicalMeasurement Metabarcoding # # Capros aper, operational taxonomic unit physicalMeasurement Metabarcoding # # Centroscymnus crepidater, operational taxonomic unit physicalMeasurement Metabarcoding # # Cetorhinus maximus, operational taxonomic unit physicalMeasurement Metabarcoding # # Chelon sp., operational taxonomic unit physicalMeasurement Metabarcoding # # Ctenolabrus rupestris, operational taxonomic unit physicalMeasurement Metabarcoding # # Cyclothone microdon, operational taxonomic unit physicalMeasurement Metabarcoding # # Dicentrarchus labrax, operational taxonomic unit physicalMeasurement Metabarcoding # # Diplodus sargus, operational taxonomic unit physicalMeasurement Metabarcoding # # Engraulis encrasicolus, operational taxonomic unit physicalMeasurement Metabarcoding # # Epigonus telescopus, operational taxonomic unit physicalMeasurement Metabarcoding # # Euthynnus alletteratus, operational taxonomic unit physicalMeasurement Metabarcoding # # Gadiculus thori, operational taxonomic unit physicalMeasurement Metabarcoding # # Helicolenus dactylopterus, operational taxonomic unit physicalMeasurement Metabarcoding # # Katsuwonus pelamis, operational taxonomic unit physicalMeasurement Metabarcoding # # Lamna nasus, operational taxonomic unit physicalMeasurement Metabarcoding # # Lampanyctus crocodilus, operational taxonomic unit physicalMeasurement Metabarcoding # # Lepidion eques, operational taxonomic unit physicalMeasurement Metabarcoding # # Leucoraja naevus, operational taxonomic unit physicalMeasurement Metabarcoding # # Lophius piscatorius, operational taxonomic unit physicalMeasurement Metabarcoding # # Maurolicus muelleri, operational taxonomic unit physicalMeasurement Metabarcoding # # Merluccius merluccius, operational taxonomic unit physicalMeasurement Metabarcoding # # Micromesistius poutassou, operational taxonomic unit physicalMeasurement Metabarcoding # # Mola mola, operational taxonomic unit physicalMeasurement Metabarcoding # # Notacanthus chemnitzii, operational taxonomic unit physicalMeasurement Metabarcoding # # Notoscopelus kroyeri, operational taxonomic unit physicalMeasurement Metabarcoding # # Pagellus sp., operational taxonomic unit physicalMeasurement Metabarcoding # # Pagrus major, operational taxonomic unit physicalMeasurement Metabarcoding # # Phoxinus sp., operational taxonomic unit physicalMeasurement Metabarcoding # # Pomatoschistus sp., operational taxonomic unit physicalMeasurement Metabarcoding # # Prionace glauca, operational taxonomic unit physicalMeasurement Metabarcoding # # Reinhardtius hippoglossoides, operational taxonomic unit physicalMeasurement Metabarcoding # # Salmo trutta, operational taxonomic unit physicalMeasurement Metabarcoding # # Sardina pilchardus, operational taxonomic unit physicalMeasurement Metabarcoding # # Scomber sp., operational taxonomic unit physicalMeasurement Metabarcoding # # Scophthalmus maximus, operational taxonomic unit physicalMeasurement Metabarcoding # # Sigmops bathyphilus, operational taxonomic unit physicalMeasurement Metabarcoding # # Solea solea, operational taxonomic unit physicalMeasurement Metabarcoding # # Sprattus sprattus, operational taxonomic unit physicalMeasurement Metabarcoding # # Stomias boa boa, operational taxonomic unit physicalMeasurement Metabarcoding # # Thunnus sp., operational taxonomic unit physicalMeasurement Metabarcoding # # Trachurus trachurus, operational taxonomic unit physicalMeasurement Metabarcoding # # Trisopterus sp., operational taxonomic unit physicalMeasurement Metabarcoding # # Xenodermichthys copei, operational taxonomic unit physicalMeasurement Metabarcoding # # Xiphias gladius, operational taxonomic unit physicalMeasurement Metabarcoding # # text/tab-separated-values unknown https://doi.pangaea.de/10.1594/PANGAEA.935870?format=textfile download dataset The data set was checked for completeness, correctness, and consistency of metainformation. Validity of used methods was checked and - if applicable - precision and range of data. EVENT LABEL: BIOMAN_2018_PV_37-1 (PV_37) * LATITUDE: 43.880000 * LONGITUDE: -6.330000 * DATE/TIME: 2018-05-09T11:30:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette 2018-05-09T11:30:00 EVENT LABEL: BIOMAN_2018_PV_54-1 (PV_54) * LATITUDE: 43.770000 * LONGITUDE: -4.600000 * DATE/TIME: 2018-05-10T04:52:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette 2018-05-10T04:52:00 EVENT LABEL: BIOMAN_2018_PV_111-1 (PV_111) * LATITUDE: 43.600000 * LONGITUDE: -2.720000 * DATE/TIME: 2018-05-11T20:07:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette 2018-05-11T20:07:00 EVENT LABEL: BIOMAN_2018_PV_136-1 (PV_136) * LATITUDE: 43.670000 * LONGITUDE: -2.170000 * DATE/TIME: 2018-05-12T09:10:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette 2018-05-12T09:10:00 EVENT LABEL: BIOMAN_2018_PV_236-1 (PV_236) * LATITUDE: 44.630000 * LONGITUDE: -2.350000 * DATE/TIME: 2018-05-13T23:10:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette 2018-05-13T23:10:00 EVENT LABEL: BIOMAN_2018_PV_402-1 (PV_402) * LATITUDE: 45.630000 * LONGITUDE: -3.710000 * DATE/TIME: 2018-05-19T12:03:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette 2018-05-19T12:03:00 EVENT LABEL: BIOMAN_2018_PV_555-1 (PV_555) * LATITUDE: 46.620000 * LONGITUDE: -5.130000 * DATE/TIME: 2018-05-22T18:43:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette 2018-05-22T18:43:00 EVENT LABEL: BIOMAN_2018_PV_629-1 (PV_629) * LATITUDE: 47.350000 * LONGITUDE: -6.430000 * DATE/TIME: 2018-05-24T15:35:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette 2018-05-24T15:35:00 Supplement to Vertical stratification of environmental DNA in the open ocean captures ecological patterns and behavior of deep-sea fishes 2021-01-01 publication https://doi.org/10.1002/lol2.10213 Canals, Oriol ocanalsd@gmail.com https://orcid.org/0000-0003-1016-1302 information author Mendibil, Iñaki imendibil@azti.es author Santos Mocoroa, María msantos@azti.es author Irigoien, Xabier xirigoien@azti.es https://orcid.org/0000-0002-5411-6741 information author Rodríguez-Ezpeleta, Naiara nrodriguez@azti.es https://orcid.org/0000-0001-6735-6755 information author documentDigital Limnology and Oceanography Letters 6(6) 339-347 Related to Marine metagenomes (eDNA) from the Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay 2021-01-01 publication insdc:PRJNA759107 Rodríguez-Ezpeleta, Naiara nrodriguez@azti.es https://orcid.org/0000-0001-6735-6755 information author documentDigital European Nucleotide Archive (ENA) Other version Vertical stratification of environmental DNA in the open ocean captures ecological patterns and behavior of deep-sea fishes - Data and Scripts 2021-01-01 publication https://doi.org/10.5281/zenodo.4543255 Rodríguez-Ezpeleta, Naiara nrodriguez@azti.es https://orcid.org/0000-0001-6735-6755 information author documentDigital Zenodo