de.pangaea.dataset935870
und
dataset
PANGAEA
info@pangaea.de
https://www.pangaea.de/
information
pointOfContact
2023-11-23T22:56:06Z
https://doi.pangaea.de/10.1594/PANGAEA.935870
Operational taxonomic units of deep-sea fishes from environmental DNA collected during Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay, with links to accession numbers
2021-09-15T14:31:48
publication
https://doi.org/10.1594/PANGAEA.935870
Canals, Oriol
ocanalsd@gmail.com
https://orcid.org/0000-0003-1016-1302
information
author
Mendibil, Iñaki
imendibil@azti.es
author
Santos Mocoroa, María
msantos@azti.es
author
Irigoien, Xabier
xirigoien@azti.es
https://orcid.org/0000-0002-5411-6741
information
author
Rodríguez-Ezpeleta, Naiara
nrodriguez@azti.es
https://orcid.org/0000-0001-6735-6755
information
author
PANGAEA
info@pangaea.de
https://www.pangaea.de/
information
publisher
tableDigital
Analysis of fish environmental DNA (DNA traces released into the environment in form of tissue, mucus, feces, etc.) from several oceanic vertical profiles (from the surface up to 2000 m depth) along the continental slope of the Bay of Biscay. We provide the geographical location of each vertical profile, the station at which each sample belongs to, the depth, date, and hour at which each sample was collected, if the sampling was carried out during day or nighttime, and the water volume filtered. The accession numbers to the raw data of the sequenced samples (available on BioProject ID insdc:PRJNA759107) are also detailed. All samples were obtained by deploying a rosette sampler, and the surface ones were also collected using the continuous clean circuit intake of the vessel. The final operational taxonomic unit counts (OTUs) of the fish species were based on sequencing the mitochondrial 12S rRNA gene on an Illumina MiSeq platform, and taxonomic assignment to the World Register of Marine Species (WoRMS) and a local database restricted to fish species of the Northeast Atlantic and Mediterranean areas.
completed
Rodríguez-Ezpeleta, Naiara
nrodriguez@azti.es
https://orcid.org/0000-0001-6735-6755
information
principalInvestigator
eDNA metabarcoding
environmental DNA
Field observation
fish diversity
fish ecology
Mesopelagic ecosystem
Pisces
vertical migration
theme
PANGAEA Keyword List
1995-01-01
creation
PANGAEA
info@pangaea.de
https://www.pangaea.de/
information
pointOfContact
EDAMAME
Environmental DNA based approaches for marine and aquatic monitoring and evaluation
SUMMER
Sustainable Management of Mesopelagic Resources
theme
PANGAEA Project List
1995-01-01
creation
PANGAEA
info@pangaea.de
https://www.pangaea.de/
information
pointOfContact
copyright
copyright
CC-BY-4.0: Creative Commons Attribution 4.0 International
textTable
und
geoscientificInformation
-6.430000000000007
-2.170000000000016
43.6
47.35
2018-05-09T11:30:00
2018-05-24T17:10:00
5.0
2080.0
Event label
thematicClassification
Station label
thematicClassification
DATE/TIME
thematicClassification
Latitude of event
thematicClassification
Longitude of event
thematicClassification
DEPTH, water
physicalMeasurement
m
m
Time of day
thematicClassification
Water volume, filtered
physicalMeasurement
m**3
m**3
Sample ID
thematicClassification
Accession number, genetics
thematicClassification
sample
Accession number, genetics
thematicClassification
project
Alepocephalus agassizii, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Anguilla anguilla, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Aphanopus carbo, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Aphia minuta, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Argentina silus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Bathylagus euryops, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Bathytroctes microlepis, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Benthosema glaciale, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Capros aper, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Centroscymnus crepidater, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Cetorhinus maximus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Chelon sp., operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Ctenolabrus rupestris, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Cyclothone microdon, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Dicentrarchus labrax, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Diplodus sargus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Engraulis encrasicolus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Epigonus telescopus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Euthynnus alletteratus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Gadiculus thori, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Helicolenus dactylopterus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Katsuwonus pelamis, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Lamna nasus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Lampanyctus crocodilus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Lepidion eques, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Leucoraja naevus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Lophius piscatorius, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Maurolicus muelleri, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Merluccius merluccius, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Micromesistius poutassou, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Mola mola, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Notacanthus chemnitzii, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Notoscopelus kroyeri, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Pagellus sp., operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Pagrus major, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Phoxinus sp., operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Pomatoschistus sp., operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Prionace glauca, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Reinhardtius hippoglossoides, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Salmo trutta, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Sardina pilchardus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Scomber sp., operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Scophthalmus maximus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Sigmops bathyphilus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Solea solea, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Sprattus sprattus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Stomias boa boa, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Thunnus sp., operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Trachurus trachurus, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Trisopterus sp., operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Xenodermichthys copei, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
Xiphias gladius, operational taxonomic unit
physicalMeasurement
Metabarcoding
#
#
text/tab-separated-values
unknown
https://doi.pangaea.de/10.1594/PANGAEA.935870?format=textfile
download
dataset
The data set was checked for completeness, correctness, and consistency of metainformation. Validity of used methods was checked and - if applicable - precision and range of data.
EVENT LABEL: BIOMAN_2018_PV_37-1 (PV_37) * LATITUDE: 43.880000 * LONGITUDE: -6.330000 * DATE/TIME: 2018-05-09T11:30:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
2018-05-09T11:30:00
EVENT LABEL: BIOMAN_2018_PV_54-1 (PV_54) * LATITUDE: 43.770000 * LONGITUDE: -4.600000 * DATE/TIME: 2018-05-10T04:52:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
2018-05-10T04:52:00
EVENT LABEL: BIOMAN_2018_PV_111-1 (PV_111) * LATITUDE: 43.600000 * LONGITUDE: -2.720000 * DATE/TIME: 2018-05-11T20:07:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
2018-05-11T20:07:00
EVENT LABEL: BIOMAN_2018_PV_136-1 (PV_136) * LATITUDE: 43.670000 * LONGITUDE: -2.170000 * DATE/TIME: 2018-05-12T09:10:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
2018-05-12T09:10:00
EVENT LABEL: BIOMAN_2018_PV_236-1 (PV_236) * LATITUDE: 44.630000 * LONGITUDE: -2.350000 * DATE/TIME: 2018-05-13T23:10:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
2018-05-13T23:10:00
EVENT LABEL: BIOMAN_2018_PV_402-1 (PV_402) * LATITUDE: 45.630000 * LONGITUDE: -3.710000 * DATE/TIME: 2018-05-19T12:03:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
2018-05-19T12:03:00
EVENT LABEL: BIOMAN_2018_PV_555-1 (PV_555) * LATITUDE: 46.620000 * LONGITUDE: -5.130000 * DATE/TIME: 2018-05-22T18:43:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
2018-05-22T18:43:00
EVENT LABEL: BIOMAN_2018_PV_629-1 (PV_629) * LATITUDE: 47.350000 * LONGITUDE: -6.430000 * DATE/TIME: 2018-05-24T15:35:00 * LOCATION: Bay of Biscay * CAMPAIGN: BIOMAN_2018 * BASIS: Ramon Margalef * METHOD/DEVICE: Bio-Rosette
2018-05-24T15:35:00
Supplement to
Vertical stratification of environmental DNA in the open ocean captures ecological patterns and behavior of deep‐sea fishes
2021-01-01
publication
https://doi.org/10.1002/lol2.10213
Canals, Oriol
ocanalsd@gmail.com
https://orcid.org/0000-0003-1016-1302
information
author
Mendibil, Iñaki
imendibil@azti.es
author
Santos Mocoroa, María
msantos@azti.es
author
Irigoien, Xabier
xirigoien@azti.es
https://orcid.org/0000-0002-5411-6741
information
author
Rodríguez-Ezpeleta, Naiara
nrodriguez@azti.es
https://orcid.org/0000-0001-6735-6755
information
author
documentDigital
Limnology and Oceanography Letters
6(6)
339-347
Related to
Marine metagenomes (eDNA) from the Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay
2021-01-01
publication
insdc:PRJNA759107
Rodríguez-Ezpeleta, Naiara
nrodriguez@azti.es
https://orcid.org/0000-0001-6735-6755
information
author
documentDigital
European Nucleotide Archive (ENA)
Other version
Vertical stratification of environmental DNA in the open ocean captures ecological patterns and behavior of deep-sea fishes - Data and Scripts
2021-01-01
publication
https://doi.org/10.5281/zenodo.4543255
Rodríguez-Ezpeleta, Naiara
nrodriguez@azti.es
https://orcid.org/0000-0001-6735-6755
information
author
documentDigital
Zenodo